Publications

2020

• Physics-Based Computational Protein Design: An Update
  
  • Mignon David
  • Druart Karen
  • Michael Eleni
  • Opuu Vaitea
  • Polydorides Savvas
  • Villa Francesco
  • Gaillard Thomas
  • Panel Nicolas
  • Archontis Georgios
  • Simonson Thomas
  Journal of Physical Chemistry A, American Chemical Society, 2020, 124 (51), pp.10637-10648. (10.1021/acs.jpca.0c07605)
  DOI : 10.1021/acs.jpca.0c07605
• Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation
  
  • Coureux Pierre-Damien
  • Lazennec-Schurdevin Christine
  • Bourcier Sophie
  • Mechulam Yves
  • Schmitt Emmanuelle
  Communications Biology, Nature Publishing Group, 2020, 3 (1). (10.1038/s42003-020-0780-0)
  DOI : 10.1038/s42003-020-0780-0
• CYFIP2 containing WAVE complexes inhibit cell migration
  
  • Polesskaya Anna
  • Boutillon Arthur
  • Wang Yanan
  • Lavielle Marc
  • Vacher Sophie
  • Schnitzler Anne
  • Molinie Nicolas
  • Rocques Nathalie
  • Fokin Artem
  • Bièche Ivan
  • David Nicolas B.
  • Gautreau Alexis
  , 2020. (10.1101/2020.07.02.184655)
  DOI : 10.1101/2020.07.02.184655
• The catalytic activity of the translation termination factor methyltransferase Mtq2-Trm112 complex is required for large ribosomal subunit biogenesis
  
  • Lacoux Caroline
  • Wacheul Ludivine
  • Saraf Kritika
  • Pythoud Nicolas
  • Huvelle Emmeline
  • Figaro Sabine
  • Graille Marc
  • Carapito Christine
  • Lafontaine Denis L J
  • Heurgué-Hamard Valérie
  Nucleic Acids Research, Oxford University Press, 2020, 48 (21), pp.gkaa972. (10.1093/nar/gkaa972)
  DOI : 10.1093/nar/gkaa972
• Structural and functional insights into $Archaeoglobus\ fulgidus$ m$^2$G$_{10}$ tRNA methyltransferase Trm11 and its Trm112 activator
  
  • Wang Can
  • Van tran Nhan
  • Jactel Vincent
  • Guérineau Vincent
  • Graille Marc
  Nucleic Acids Research, Oxford University Press, 2020, 48 (19), pp.11068 - 11082. (10.1093/nar/gkaa830)
  DOI : 10.1093/nar/gkaa830
• Recent Advances in Archaeal Translation Initiation
  
  • Schmitt Emmanuelle
  • Coureux Pierre-Damien
  • Kazan Ramy
  • Bourgeois Gabrielle
  • Lazennec-Schurdevin Christine
  • Mechulam Yves
  Frontiers in Microbiology, Frontiers Media, 2020, 11. (10.3389/fmicb.2020.584152)
  DOI : 10.3389/fmicb.2020.584152
• Using NMR for the structural and kinetic characterization of peptide - liposome associations to support formulation design
  
  • Doyen Camille
  • Larquet Eric
  • Coureux Pierre-Damien
  • Frances Oriane
  • Herman Frédéric
  • Sablé Serge
  • Burnouf Jean-Pierre
  • Sizun Christina
  • Lescop Ewen
  , 2020.
• Application of Various Molecular Modelling Methods in the Study of Estrogens and Xenoestrogens
  
  • Mazurek Anna Helena
  • Szeleszczuk Łukasz
  • Simonson Thomas
  • Pisklak Dariusz Maciej
  International Journal of Molecular Sciences, MDPI, 2020, 21 (17), pp.6411. (10.3390/ijms21176411)
  DOI : 10.3390/ijms21176411
• Hybrid MC/MD for protein design
  
  • Michael Eleni
  • Polydorides Savvas
  • Simonson Thomas
  • Archontis Georgios
  The Journal of Chemical Physics, American Institute of Physics, 2020, 153 (5), pp.054113. (10.1063/5.0013320)
  DOI : 10.1063/5.0013320
• A physics-based energy function allows the computational redesign of a PDZ domain
  
  • Opuu Vaitea
  • Sun Young Joo
  • Hou Titus
  • Panel Nicolas
  • Fuentes Ernesto
  • Simonson Thomas
  Scientific Reports, Nature Publishing Group, 2020, 10 (1), pp.11150. (10.1038/s41598-020-67972-w)
  DOI : 10.1038/s41598-020-67972-w
• The 18S ribosomal RNA m 6 A methyltransferase Mettl5 is required for normal walking behavior in Drosophila
  
  • Leismann Jessica
  • Spagnuolo Mariangela
  • Pradhan Mihika
  • Wacheul Ludivine
  • Vu Minh Anh
  • Musheev Michael
  • Mier Pablo
  • Andrade‐navarro Miguel
  • Graille Marc
  • Niehrs Christof
  • Lafontaine Denis Lj
  • Roignant Jean‐yves
  EMBO Reports, EMBO Press, 2020, 21 (7), pp.e49443. (10.15252/embr.201949443)
  DOI : 10.15252/embr.201949443
• Pby1 is a direct partner of the Dcp2 decapping enzyme
  
  • Charenton Clément
  • Gaudon-Plesse Claudine
  • Back Régis
  • Ulryck Nathalie
  • Cosson Loreline
  • Séraphin Bertrand
  • Graille Marc
  Nucleic Acids Research, Oxford University Press, 2020, 48 (11). (10.1093/nar/gkaa337)
  DOI : 10.1093/nar/gkaa337
• Meeting Report – Workshop ‘Actin-based mechanosensation and force generation in health and disease’
  
  • Polesskaya Anna
  • Vicente-Manzanares Miguel
  Journal of Cell Science, Company of Biologists, 2020, 133 (6), pp.jcs244319. (10.1242/jcs.244319)
  DOI : 10.1242/jcs.244319
• ERH proteins: connecting RNA processing to tumorigenesis?
  
  • Graille Marc
  • Rougemaille Mathieu
  Current Genetics, Springer Verlag, 2020, 66 (4), pp.689-692. (10.1007/s00294-020-01065-z)
  DOI : 10.1007/s00294-020-01065-z
• Formation of S. pombe Erh1 homodimer mediates gametogenic gene silencing and meiosis progression
  
  • Hazra Ditipriya
  • Andrić Vedrana
  • Palancade Benoit
  • Rougemaille Mathieu
  • Graille Marc
  Scientific Reports, Nature Publishing Group, 2020, 10 (1), pp.1034. (10.1038/s41598-020-57872-4)
  DOI : 10.1038/s41598-020-57872-4
• Adaptive landscape flattening allows the design of both enzyme: Substrate binding and catalytic power
  
  • Opuu Vaitea
  • Nigro Giuliano
  • Gaillard Thomas
  • Schmitt Emmanuelle
  • Mechulam Yves
  • Simonson Thomas
  PLoS Computational Biology, PLOS, 2020, 16 (1), pp.e1007600. (10.1371/journal.pcbi.1007600)
  DOI : 10.1371/journal.pcbi.1007600
• Actin polymerization downstream of integrins: signaling pathways and mechanotransduction
  
  • Romero Stéphane
  • Le Clainche Christophe
  • Gautreau Alexis
  Biochemical Journal, Portland Press, 2020, 477 (1), pp.1--21. (10.1042/BCJ20170719)
  DOI : 10.1042/BCJ20170719
• Structural basis of the interaction between cyclodipeptide synthases and aminoacylated tRNA substrates
  
  • Bourgeois Gabrielle
  • Seguin Jérôme
  • Babin Morgan
  • Gondry Muriel
  • Mechulam Yves
  • Schmitt Emmanuelle
  RNA, Cold Spring Harbor Laboratory Press, 2020. (10.1261/rna.075184.120)
  DOI : 10.1261/rna.075184.120
• MasterPATH: network analysis of functional genomics screening data
  
  • Rubanova Natalia
  • Pinna Guillaume
  • Kropp Jeremie
  • Campalans Anna
  • Radicella Juan Pablo
  • Polesskaya Anna
  • Harel-Bellan Annick
  • Morozova Nadya
  BMC Genomics, BioMed Central, 2020, 21 (1), pp.632. (10.1186/s12864-020-07047-2)
  DOI : 10.1186/s12864-020-07047-2
• Mutational drivers of cancer cell migration and invasion
  
  • Novikov Nikita M
  • Zolotaryova Sofia y
  • Gautreau Alexis
  • Denisov Evgeny V
  British Journal of Cancer, Cancer Research UK, 2020, 124, pp.102-114. (10.1038/s41416-020-01149-0)
  DOI : 10.1038/s41416-020-01149-0
• Recognition of different base tetrads by RHAU (DHX36): X-ray crystal structure of the G4 recognition motif bound to the 3'-end tetrad of a DNA G-quadruplex
  
  • Heddi Brahim
  • Vee Cheong Vee
  • Schmitt Emmanuelle
  • Mechulam Yves
  • Tuân Phan Anh
  Journal of Structural Biology, Elsevier, 2020, 209 (1), pp.S1047-8477(19)30210-2. (10.1016/j.jsb.2019.10.001)
  DOI : 10.1016/j.jsb.2019.10.001