Publications

2023

• The YTHDF1-3 proteins are bidirectionally influenced by the codon content of their mRNA targets
  
  • Moch Clara
  • Zou Limei
  • Pythoud Nicolas
  • Fillon Emilie
  • Bourgeois Gabrielle
  • Graille Marc
  • Carapito Christine
  • Chapat Clement
  , 2023. (10.1101/2023.11.20.565808)
  DOI : 10.1101/2023.11.20.565808
• Machine learning to understand and engineer the structural kinome
  
  • Reveguk Ivan
  , 2023.
• Codependencies of mTORC1 signaling and endolysosomal actin structures
  
  • Priya Amulya
  • Antoine-Bally Sandra
  • Macé Anne-Sophie
  • Monteiro Pedro
  • Sabatet Valentin
  • Remy David
  • Dingli Florent
  • Loew Damarys
  • Demetriades Constantinos
  • Gautreau Alexis
  • Chavrier Philippe
  Science Advances, American Association for the Advancement of Science (AAAS), 2023, 9 (37), pp.eadd9084. (10.1126/sciadv.add9084)
  DOI : 10.1126/sciadv.add9084
• Involvement of eIF2 in cardiomyocytes response to endoplasmic reticulum stress
  
  • Cardenal Peralta Cristina
  , 2023.
• Implementation of an orthogonal cysteine translation initiation system in E. coli
  
  • Paupelin-Vaucelle, Humbeline
  • Boschiero Claire
  • Lazennec-Schurdevin Christine
  • Mechulam Yves
  • Schmitt Emmanuelle
  • Marliere Philippe
  • Pezo Valérie
  , 2023.
• PLP-Dependent Enzyme Methionine γ-Lyase: Insights into the Michaelis Complex from Molecular Dynamics and Free Energy Simulations
  
  • Chen Xingyu
  • Ferchaud Nathan
  • Briozzo Pierre
  • Machover David
  • Simonson Thomas
  Biochemistry, American Chemical Society, 2023, 62 (18), pp.2791-2801. (10.1021/acs.biochem.3c00355)
  DOI : 10.1021/acs.biochem.3c00355
• Redesigning methionyl‐tRNA synthetase for β‐methionine activity with adaptive landscape flattening and experiments
  
  • Opuu Vaitea
  • Nigro Giuliano
  • Lazennec-Schurdevin Christine
  • Mechulam Yves
  • Schmitt Emmanuelle
  • Simonson Thomas
  Protein Science, Wiley, 2023, 32 (9). (10.1002/pro.4738)
  DOI : 10.1002/pro.4738
• Binding of human Cdc123 to eIF2γ
  
  • Cardenal Peralta Cristina
  • Vandroux Paul
  • Neumann-Arnold Lea
  • Panvert Michel
  • Fagart Jérôme
  • Seufert Wolfgang
  • Mechulam Yves
  • Schmitt Emmanuelle
  Journal of Structural Biology, Elsevier, 2023, 215 (3), pp.108006. (10.1016/j.jsb.2023.108006)
  DOI : 10.1016/j.jsb.2023.108006
• Vinculin-Arp2/3 interaction antagonises branched actin to control single and collective cell behaviours
  
  • James John
  , 2023.
• Implementation of an orthogonal cysteine translation initiation system in E. coli
  
  • Paupelin-Vaucelle, Humbeline
  • Boschiero Claire
  • Lazennec-Schurdevin Christine
  • Mechulam Yves
  • Schmitt Emmanuelle
  • Marliere Philippe
  • Pezo Valérie
  , 2023.
• Nanopore-based RNA sequencing deciphers the formation, processing, and modification steps of rRNA intermediates in archaea
  
  • Grünberger Felix
  • Jüttner Michael
  • Knüppel Robert
  • Ferreira-Cerca Sébastien
  • Grohmann Dina
  RNA, Cold Spring Harbor Laboratory Press, 2023, 29 (8), pp.1255-1273. (10.1261/rna.079636.123)
  DOI : 10.1261/rna.079636.123
• ERH : a plug‐and‐play protein important for gene silencing and cell cycle progression
  
  • Graille Marc
  FEBS Journal, Wiley, 2023, 290 (3), pp.688-691. (10.1111/febs.16669)
  DOI : 10.1111/febs.16669
• Best Practices of Using AI-Based Models in Crystallography and Their Impact in Structural Biology
  
  • Graille Marc
  • Sacquin-Mora Sophie
  • Taly Antoine
  Journal of Chemical Information and Modeling, American Chemical Society, 2023. (10.1021/acs.jcim.3c00381)
  DOI : 10.1021/acs.jcim.3c00381
• Transcriptional and translational dynamics underlying heat shock response in the thermophilic crenarchaeon Sulfolobus acidocaldarius
  
  • Baes Rani
  • Grünberger Felix
  • Pyr Dit Ruys Sébastien
  • Couturier Mohea
  • de Keulenaer Sarah
  • Skevin Sonja
  • van Nieuwerburgh Filip
  • Vertommen Didier
  • Grohmann Dina
  • Ferreira-Cerca Sébastien
  • Peeters Eveline
  mBio, American Society for Microbiology, 2023. (10.1128/mbio.03593-22)
  DOI : 10.1128/mbio.03593-22
• Structural insights into the evolution of late steps of translation initiation in the three domains of life
  
  • Kazan Ramy
  • Bourgeois Gabrielle
  • Lazennec-Schurdevin Christine
  • Coureux Pierre-Damien
  • Mechulam Yves
  • Schmitt Emmanuelle
  Biochimie, Elsevier, 2023, pp.S0300-9084(23)00030-5. (10.1016/j.biochi.2023.02.002)
  DOI : 10.1016/j.biochi.2023.02.002
• Computational protein design repurposed to explore enzyme vitality and help predict antibiotic resistance
  
  • Michael Eleni
  • Saint-Jalme Rémy
  • Mignon David
  • Simonson Thomas
  Frontiers in Molecular Biosciences, Frontiers Media, 2023, 9, pp.905588. (10.3389/fmolb.2022.905588)
  DOI : 10.3389/fmolb.2022.905588
• PPP2R1A regulates migration persistence through the NHSL1-containing WAVE Shell Complex
  
  • Wang Yanan
  • Chiappetta Giovanni
  • Guérois Raphaël
  • Liu Yijun
  • Romero Stéphane
  • Boesch Daniel
  • Krause Matthias
  • Dessalles Claire
  • Babataheri Avin
  • Barakat Abdul
  • Chen Baoyu
  • Vinh Joelle
  • Polesskaya Anna
  • Gautreau Alexis
  Nature Communications, Nature Publishing Group, 2023, 14 (1), pp.3541. (10.1038/s41467-023-39276-w)
  DOI : 10.1038/s41467-023-39276-w
• N 2-methylguanosine modifications on human tRNAs and snRNA U6 are important for cell proliferation, protein translation and pre-mRNA splicing
  
  • Wang Can
  • Ulryck Nathalie
  • Herzel Lydia
  • Pythoud Nicolas
  • Kleiber Nicole
  • Guerineau Vincent
  • Jactel Vincent
  • Moritz Chloé
  • Bohnsack Markus T
  • Carapito Christine
  • Touboul David
  • Bohnsack Katherine E
  • Graille Marc
  Nucleic Acids Research, Oxford University Press, 2023, 51 (14), pp.7496-7519. (10.1093/nar/gkad487)
  DOI : 10.1093/nar/gkad487